prepSeuratForClustView: prepSeuratForClustView

Description Usage Arguments Value

Description

prepSeuratForClustView

Usage

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prepSeuratForClustView(seurat, markerslist, res_prefixes = NULL,
  species = "Mm", ontologies = c("BP", "CC"))

Arguments

seurat

An object of class 'Seurat'

markerslist

A nested list of markers' tables (as produced by 'Seurat::FindAllMarkers()') for each method and resolution

res_prefixes

The list of clustering prefixes to use from 'seurat@meta.data' (default all detected)

species

Two-letter species code (corresponding to the 'org.Xx.eg' package), default 'Mm'.

ontologies

The GO tree to use; any combination of "BP", "CC", and "MF" (default 'c("BP", "CC")')

Value

The 'seurat' object, with cluster annotation in the slot 'seurat@misc$clusterAnnotation'


plger/clustView documentation built on May 31, 2019, 5:42 a.m.