prepSeuratForClustView: prepSeuratForClustView

In plger/clustView: clustView

Description

prepSeuratForClustView

Usage

prepSeuratForClustView(seurat, markerslist, res_prefixes = NULL,
  species = "Mm", ontologies = c("BP", "CC"))

Arguments

seurat	An object of class 'Seurat'
markerslist	A nested list of markers' tables (as produced by 'Seurat::FindAllMarkers()') for each method and resolution
res_prefixes	The list of clustering prefixes to use from '[e-mail]' (default all detected)
species	Two-letter species code (corresponding to the 'org.Xx.eg' package), default 'Mm'.
ontologies	The GO tree to use; any combination of "BP", "CC", and "MF" (default 'c("BP", "CC")')

Value

The 'seurat' object, with cluster annotation in the slot 'seurat@misc$clusterAnnotation'

plger/clustView documentation built on May 31, 2019, 5:42 a.m.