Files in plger/pipeComp
pipeComp pipeline benchmarking framework
DESCRIPTION
LICENSE
NAMESPACE
R/PipelineDefinition.R
R/aggregation.R
R/data.R
R/dea_evaluationFunctions.R
R/dea_pipeline.R
R/evalHeatmap.R
R/misc.R
R/plotElapsed.R
R/runPipeline.R
R/scrna_evaluationFunctions.R
R/scrna_pipeline.R
R/scrna_plot.R
R/scrna_utils.R
README.md
data/clustMetricsCorr.RData
data/ctrlgenes.RData
data/exampleDEAresults.RData
data/exampleResults.RData
data/stableG.RData
inst/CITATION
inst/NEWS
inst/docs/clust.png
inst/docs/dr.png
inst/docs/pipeComp_scheme.png
inst/docs/silh.png
inst/docs/sticker.png
inst/extdata/DoDataImputation.R
inst/extdata/FisherSeparability.py
inst/extdata/MCVR.R
inst/extdata/dea_wrappers.R
inst/extdata/impWrappers.R
inst/extdata/scVI.py
inst/extdata/scrna_alternatives.R
inst/extdata/willtownes_scrna2019_utils.R
man/PipelineDefinition-methods.Rd
man/PipelineDefinition.Rd
man/addPipelineStep.Rd
man/aggregatePipelineResults.Rd
man/buildCombMatrix.Rd
man/checkPipelinePackages.Rd
man/clustMetricsCorr.Rd
man/colCenterScale.Rd
man/ctrlgenes.Rd
man/dea_evalPlot_curve.Rd
man/dea_pipeline.Rd
man/defaultStepAggregation.Rd
man/evalHeatmap.Rd
man/evaluateClustering.Rd
man/evaluateDEA.Rd
man/evaluateDimRed.Rd
man/evaluateNorm.Rd
man/exampleDEAresults.Rd
man/exampleResults.Rd
man/farthestPoint.Rd
man/getDimensionality.Rd
man/getQualitativePalette.Rd
man/match_evaluate_multiple.Rd
man/mergePipelineResults.Rd
man/mockPipeline.Rd
man/parsePipNames.Rd
man/pipeComp-package.Rd
man/plotElapsed.Rd
man/readPipelineResults.Rd
man/runPipeline.Rd
man/scrna_describeDatasets.Rd
man/scrna_evalPlot_filtering.Rd
man/scrna_evalPlot_overall.Rd
man/scrna_evalPlot_silh.Rd
man/scrna_pipeline.Rd
man/stableG.Rd
sticker.png
vignettes/pipeComp.Rmd
vignettes/pipeComp_dea.Rmd
vignettes/pipeComp_scRNA.Rmd
