aggregatePipelineResults: aggregatePipelineResults
In plger/pipeComp: pipeComp pipeline benchmarking framework

Description Usage Arguments Value Examples

Aggregates the evaluation and running times of 'runPipeline' results. Results should be indicated either as a 'path“ prefix or as a vector of paths to 'evaluation\.rds' files ('resfiles').

1	aggregatePipelineResults(res, pipDef = NULL)

`res`	A (named) list of results (per dataset), as produced by `readPipelineResults` (or 'mergePipelineResults').
`pipDef`	An optional `PipelineDefinition` containing the aggregation methods. If omitted, that from the results will be used.

A list with a slot for each step for which there is an aggregation method, or (if no aggregation method available) a list of the 'stepIntermediateReturnObjects' of 'runPipeline'

# we produce mock pipeline results:
pip <- mockPipeline()
datasets <- list( ds1=1:3, ds2=c(5,10,15) )
tmpdir1 <- paste0(tempdir(),'/')
res <- runPipeline(datasets, pipelineDef=pip, output.prefix=tmpdir1,
                   alternatives=list() )
# we read the evaluation files:
res <- readPipelineResults(tmpdir1)
# we aggregate the results (equivalent to the output of `runPipeline`):
res <- aggregatePipelineResults(res)