Man pages for plger/pipeComp
pipeComp pipeline benchmarking framework
| addPipelineStep | addPipelineStep |
| aggregatePipelineResults | aggregatePipelineResults |
| buildCombMatrix | buildCombMatrix |
| checkPipelinePackages | checkPipelinePackages |
| clustMetricsCorr | Correlations across clustering evaluation metrics |
| colCenterScale | colCenterScale |
| ctrlgenes | Lists of control genes |
| dea_evalPlot_curve | dea_evalPlot_curve |
| dea_pipeline | dea_pipeline |
| defaultStepAggregation | defaultStepAggregation |
| evalHeatmap | evalHeatmap |
| evaluateClustering | evaluateClustering |
| evaluateDEA | evaluateDEA |
| evaluateDimRed | evaluateDimRed |
| evaluateNorm | evaluateNorm |
| exampleDEAresults | Example results from the DEA pipeline |
| exampleResults | Example pipeline results |
| farthestPoint | farthestPoint |
| getDimensionality | getDimensionality |
| getQualitativePalette | getQualitativePalette |
| match_evaluate_multiple | match_evaluate_multiple |
| mergePipelineResults | mergePipelineResults |
| mockPipeline | mockPipeline |
| parsePipNames | parsePipNames |
| pipeComp-package | pipeComp - a framework for pipeline benchmarking |
| PipelineDefinition | PipelineDefinition |
| PipelineDefinition-methods | Methods for 'PipelineDefinition' class |
| plotElapsed | plotElapsed |
| readPipelineResults | readPipelineResults |
| runPipeline | runPipeline |
| scrna_describeDatasets | scrna_describeDatasets |
| scrna_evalPlot_filtering | scrna_evalPlot_filtering |
| scrna_evalPlot_overall | scrna_evalPlot_overall |
| scrna_evalPlot_silh | scrna_evalPlot_silh |
| scrna_pipeline | scrna_pipeline |
| stableG | Lists of stable genes |
