API for pllittle/UNMASC
Tumor-Only Variant Calling with Unmatched Normal Control Samples
| Global functions | |
|---|---|
| ARTI_find | Source code |
| BAF_EM_VAF | Man page Source code |
| BINOM_INFER | Source code |
| BINOM_NOISE | Source code |
| FFPE_find | Source code |
| Rcpp_BAF_clust | Source code |
| Rcpp_LL | Source code |
| Rcpp_RDQ | Source code |
| Rcpp_get_target | Source code |
| Rcpp_logSumExp | Source code |
| TO_genotype | Source code |
| TO_pipe_add_prop_nlabel_ART | Source code |
| UNMASC_definitions | Man page Source code |
| UNMASC_nSEG | Source code |
| UNMASC_tSEG | Source code |
| anno_SEG | Source code |
| anno_nSEG | Source code |
| artifact_filter | Source code |
| create_target | Source code |
| create_xCoor | Source code |
| effect_12 | Source code |
| filter_E_snpEff | Source code |
| gauss_unif | Source code |
| gen_genome | Source code |
| gen_make_vcfs | Source code |
| gen_normal_state | Source code |
| gen_simulated_data | Man page Source code |
| gen_tumor_counts | Source code |
| gen_tumor_state | Source code |
| gen_umn_counts | Source code |
| gen_vc_status | Source code |
| genome_plot | Source code |
| get_ALLELE_STAT | Source code |
| get_EXONIC | Source code |
| get_INDEL_RefAlt_TRINUC | Source code |
| get_INFER | Source code |
| get_INFER_geno | Source code |
| get_counts | Source code |
| get_genome_coor | Source code |
| get_max_LL_result | Source code |
| get_pileup | Source code |
| import_ANNO | Source code |
| import_VCFs | Man page Source code |
| import_bed | Source code Source code |
| import_strelkaVCF | Source code |
| make_uniq_vc_anno | Source code |
| new_STRAND | Man page Source code |
| parse_EFF_string | Source code |
| parse_onco | Source code |
| plot_TO | Source code |
| prep_TARGET | Source code |
| prep_UNMASC_VCF | Man page Source code |
| prep_genome | Source code |
| proto_simple_TO_pipe | Source code |
| run_AF_SEG | Man page Source code |
| run_UNMASC | Man page Source code |
| run_hsMetric_clustRank | Man page Source code |
| run_nCLUST | Source code |
| run_nCLUST_opt | Source code |
| segment_nVAF | Source code |
| segment_tVAF | Source code |
| simulate_BAF | Man page Source code |
| smart_RefAlt | Source code |
| smart_header | Source code |
| smart_sprintf | Source code |
| smart_uniq_df | Source code |
| test_parallel_MQ | Source code |
