run_hsMetric_clustRank: run_hsMetric_clustRank

In pllittle/UNMASC: Tumor-Only Variant Calling with Unmatched Normal Control Samples

run_hsMetric_clustRank

Description

Clusters sample metrics to identify outlier and reliable samples to establish a normal control cohort

Usage

run_hsMetric_clustRank(DATA, VARS, ID, TRIALS = 50, note = "")

Arguments

DATA	A data.frame of sample ID and metrics to cluster on
VARS	A character vector of at least two metrics to cluster on within DATA
ID	A character string specifying the column name in DATA that corresponds to sample ID.
TRIALS	An integer number of times to re-run the EM algorithm, more trials help to avoid using a sub-optimal solution.
note	A character string to label the plot title

Value

R data.frame of cluster results and sample labeling.

pllittle/UNMASC documentation built on June 1, 2025, 1 p.m.