Files in pllittle/UNMASC
Tumor-Only Variant Calling with Unmatched Normal Control Samples
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/HJ_arti.R
R/RcppExports.R
R/TO_geno.R
R/UNMASC.R
R/genome.R
R/import.R
R/nCLUST.R
R/segment.R
R/simulate.R
R/vcf.R
README.md
beta/aggregate.sh
debug/build.R
images/workflow.PNG
inst/CITATION
inst/include/allele_freq.h
inst/include/minor.h
man/BAF_EM_VAF.Rd
man/UNMASC_definitions.Rd
man/gen_simulated_data.Rd
man/import_VCFs.Rd
man/new_STRAND.Rd
man/prep_UNMASC_VCF.Rd
man/run_AF_SEG.Rd
man/run_UNMASC.Rd
man/run_hsMetric_clustRank.Rd
man/simulate_BAF.Rd
other/visuals.R
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/UNMASC.cpp
src/allele_freq.cpp
src/minor.cpp
vignettes/apa.csl
vignettes/intro.Rmd
vignettes/intro.html
vignettes/references.bib
workflow/inputs.md
workflow/tumor_only.sh
