all_subset: Identify All Biomolecules for Use in Normalization

In pmartR/pmartR: Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data

Identify All Biomolecules for Use in Normalization

Description

Selects biomolecules for normalization via choosing all biomolecules currently in the data

Usage

all_subset(e_data, edata_id)

Arguments

e_data	a p \times n + 1 data.frame, where p is the number of peptides, proteins, lipids, or metabolites and n is the number of samples. Each row corresponds to data for a peptide, protein, lipid, or metabolite, with one column giving the biomolecule identifier name.
edata_id	character string indicating the name of the peptide, protein, lipid, or metabolite identifier. Usually obtained by calling attr(omicsData, "cnames")$edata_cname.

Details

This function returns the subset of all biomolecules. These will be used for normalization.

Value

Character vector containing all biomolecules.

Author(s)

Kelly Stratton

pmartR/pmartR documentation built on April 24, 2024, 10:22 p.m.