API for pmartR/pmartR
Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data
| Global functions | |
|---|---|
| %>% | Man page |
| %dopar% | Man page |
| .as.isobaricpepData | Source code |
| .as.lipidData | Source code |
| .as.metabData | Source code |
| .as.pepData | Source code |
| .as.proData | Source code |
| .missingval_heatmap | Source code |
| .missingval_scatterplot | Source code |
| .missingval_volcanoplot | Source code |
| .plot.corRes | Source code |
| .plot.cvFilt | Source code |
| .plot.imdanovaFilt | Source code |
| .plot.isobaricnormRes | Source code |
| .plot.moleculeFilt | Source code |
| .plot.naRes | Source code |
| .plot.proteomicsFilt | Source code |
| .plot.rmdFilt | Source code |
| .plot.statRes | Source code |
| .spans_procedure | Source code |
| MSnSet2pepData | Man page Source code |
| all_subset | Man page Source code |
| analysis_log | Man page Source code |
| anova_cpp | Source code |
| anova_filter | Man page Source code |
| anova_test | Man page Source code |
| anova_test_R | Source code |
| applyFilt | Man page Source code |
| applyFilt.customFilt | Man page Source code |
| applyFilt.cvFilt | Man page Source code |
| applyFilt.imdanovaFilt | Man page Source code |
| applyFilt.moleculeFilt | Man page Source code |
| applyFilt.proteomicsFilt | Man page Source code |
| applyFilt.rmdFilt | Man page Source code |
| as.isobaricpepData | Man page Source code |
| as.lipidData | Man page Source code |
| as.metabData | Man page Source code |
| as.pepData | Man page Source code |
| as.proData | Man page Source code |
| bpquant | Man page Source code |
| bpquant_mod | Man page Source code |
| build_pair_mat | Source code |
| build_x_mat | Source code |
| combine_fn_mean | Source code |
| combine_fn_median | Source code |
| combine_techreps | Man page Source code |
| complete_mols | Man page Source code |
| cor_result | Man page Source code |
| count_missing | Source code |
| count_missing_cpp | Source code |
| create_c_matrix | Source code |
| create_comparisonDF | Man page Source code |
| custom_filter | Man page Source code |
| custom_sampnames | Man page Source code |
| cv.calc | Man page Source code |
| cv_filter | Man page Source code |
| dim_reduction | Man page Source code |
| edata_replace | Man page Source code |
| edata_replace.lipidData | Man page Source code |
| edata_replace.metabData | Man page Source code |
| edata_replace.pepData | Man page Source code |
| edata_replace.proData | Man page Source code |
| edata_summary | Man page Source code |
| edata_transform | Man page Source code |
| edata_transform.lipidData | Man page Source code |
| edata_transform.metabData | Man page Source code |
| edata_transform.pepData | Man page Source code |
| edata_transform.proData | Man page Source code |
| fit_surv | Man page Source code |
| fold_change_diff | Source code |
| fold_change_diff_copy | Source code |
| fold_change_diff_na_okay | Source code |
| fold_change_logbase2 | Source code |
| fold_change_ratio | Source code |
| g_test | Man page Source code |
| get_comparisons | Man page Source code |
| get_data_class | Man page Source code |
| get_data_norm | Man page Source code |
| get_data_scale | Man page Source code |
| get_edata_cname | Man page Source code |
| get_emeta_cname | Man page Source code |
| get_fdata_cname | Man page Source code |
| get_filters | Man page Source code |
| get_group_info | Man page Source code |
| get_group_table | Man page Source code |
| get_isobaric_norm | Man page Source code |
| get_spans_params | Man page Source code |
| getchecknames | Man page Source code |
| group_comparison_anova | Man page Source code |
| group_comparison_anova_cpp | Source code |
| group_comparison_imd | Source code |
| group_designation | Man page Source code |
| gtest_cpp | Source code |
| gtest_filter | Man page Source code |
| hello | Man page |
| holm_cpp | Source code |
| imd_anova | Man page Source code |
| imd_test | Man page Source code |
| imd_test_R | Source code |
| imdanova_filter | Man page Source code |
| isoformRes_func | Source code |
| kw_rcpp | Source code |
| los | Man page Source code |
| mad_transform | Man page Source code |
| mean_center | Man page Source code |
| mean_sse_fun | Source code |
| median_center | Man page Source code |
| missingval_heatmap | Man page Source code |
| missingval_result | Man page Source code |
| missingval_scatterplot | Man page Source code |
| missingval_volcanoplot | Man page Source code |
| molecule_filter | Man page Source code |
| myfunc | Source code |
| nonmissing_per_group | Man page Source code |
| nonmissing_per_grp | Source code |
| normalize_global | Man page Source code |
| normalize_global_matrix | Source code |
| normalize_isobaric | Man page Source code |
| normalize_loess | Man page Source code |
| normalize_quantile | Man page Source code |
| p_adjustment_anova | Man page Source code |
| plot-pmartR | Man page |
| plot.SPANSRes | Man page Source code |
| plot.corRes | Man page Source code |
| plot.customFilt | Man page |
| plot.cvFilt | Man page Source code |
| plot.dataRes | Man page Source code |
| plot.dimRes | Man page |
| plot.imdanovaFilt | Man page Source code |
| plot.isobaricnormRes | Man page Source code |
| plot.lipidData | Man page |
| plot.metabData | Man page |
| plot.moleculeFilt | Man page Source code |
| plot.naRes | Man page Source code |
| plot.normRes | Man page |
| plot.pepData | Man page |
| plot.proData | Man page |
| plot.proteomicsFilt | Man page Source code |
| plot.rmdFilt | Man page Source code |
| plot.statRes | Man page Source code |
| plot_km | Man page Source code |
| pmartR | Man page |
| pmartR-package | Man page |
| pmartR_filter_worker | Man page Source code |
| pooled_cv_rcpp | Source code |
| ppp | Man page Source code |
| ppp_rip | Man page Source code |
| pquant_mean | Man page Source code |
| pquant_median | Man page Source code |
| pre_imdanova_melt | Man page Source code |
| print.customFilt | Man page Source code |
| print.cvFilt | Man page Source code |
| print.cvFilterSummary | Man page Source code |
| print.dataRes | Man page Source code |
| print.imdanovaFilt | Man page Source code |
| print.imdanovaFilterSummary | Man page Source code |
| print.lipidData | Man page Source code |
| print.metabData | Man page Source code |
| print.moleculeFilt | Man page Source code |
| print.moleculeFilterSummary | Man page Source code |
| print.normRes | Man page Source code |
| print.pepData | Man page Source code |
| print.proData | Man page Source code |
| print.proteomicsFilt | Man page Source code |
| print.proteomicsFilterSummary | Man page Source code |
| print.rmdFilt | Man page Source code |
| print.rmdFilterSummary | Source code |
| print.statRes | Source code |
| proj_mat | Source code |
| proj_mat_cpp | Source code |
| project_to_null | Source code |
| project_to_null_cpp | Source code |
| protein_quant | Man page Source code |
| proteomics_filter | Man page Source code |
| ptukey_speed | Source code |
| qrollup | Man page Source code |
| ranked_holm_cpp | Source code |
| rcpp_hello_world | Source code |
| reduce_xmatrix | Source code |
| reexports | Man page |
| report_dataRes | Man page Source code |
| rip | Man page Source code |
| rmd_conversion | Man page Source code |
| rmd_filter | Man page Source code |
| rmd_filter.lipidData | Man page Source code |
| rmd_filter.metabData | Man page Source code |
| rmd_filter.pepData | Man page Source code |
| rmd_filter.proData | Man page Source code |
| rrollup | Man page Source code |
| run_group_meancor | Man page Source code |
| run_kurtosis | Man page Source code |
| run_mad | Man page Source code |
| run_prop_missing | Man page Source code |
| run_skewness | Man page Source code |
| run_twofactor_cpp | Source code |
| setchecknames | Man page Source code |
| spans_make_distribution | Man page Source code |
| spans_procedure | Man page Source code |
| statRes-class | Man page |
| statRes_output | Man page Source code |
| summary-omicsData | Man page |
| summary-pmartR | Man page |
| summary-pmartR-results | Man page |
| summary.SPANSRes | Man page Source code |
| summary.corRes | Man page Source code |
| summary.customFilt | Man page Source code |
| summary.cvFilt | Man page Source code |
| summary.dimRes | Man page Source code |
| summary.imdanovaFilt | Man page Source code |
| summary.isobaricnormRes | Man page Source code |
| summary.lipidData | Man page Source code |
| summary.metabData | Man page Source code |
| summary.moleculeFilt | Man page Source code |
| summary.normRes | Man page Source code |
| summary.pepData | Man page Source code |
| summary.proData | Man page Source code |
| summary.proteomicsFilt | Man page Source code |
| summary.rmdFilt | Man page Source code |
| summary.statRes | Source code |
| summary_km | Man page Source code |
| surv_designation | Man page Source code |
| test_normRes | Man page Source code |
| test_normalization | Man page Source code |
| two_factor_anova_cpp | Source code |
| vector_replace | Man page Source code |
| verify_data_info | Man page Source code |
| write_stat_results | Man page Source code |
| write_stat_results_omics | Man page Source code |
| zrollup | Man page Source code |
| zscore_transform | Man page Source code |
