Man pages for pmgrollemund/phyloHIV
| add_outgroup | add_outgroup |
| align_seq | align_seq |
| blastn | blastn |
| building_tree | building_tree |
| check_HXB2 | check_HXB2 |
| clades_extracting | clades_extracting |
| clean_LANL | Clean the LANL database. |
| extract_HXB2 | extract_HXB2 |
| find_identical_sequences | find_identical_sequences |
| get_closest_seq | get_closest_seq |
| is.unique | is.unique |
| makeblastdb | makeblastdb |
| MRCA_correction | clades_extracting |
| phyloscanner_postprocess | phyloscanner_postprocess |
| postprocess_tree | postprocess_tree |
| rm_DRM | rm_DRM |
| rm_gaps_LANL | rm_gaps_LANL |
| seq_rm_drugresistance2 | seq_rm_drugresistance2 |
| tips_relabelling | tips_relabelling |
| tips_relabelling.internal | tips_relabelling.internal |
| wrap_extract.clades | extract.clades_wrap |
| wrap_phyloscanner_analyse_tree | wrap_phyloscanner_analyse_tree |
| write_option_file | write_option_file |
| write_qsub | write_qsub |
