get.ucsc.dbl: Download annotation from UCSC servers, according to organism...
In pmoulos/metaseqR-local: An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Directly downloads UCSC and RefSeq annotation files from UCSC servers
to be used with metaseqR. This functionality is used when the package
RMySQL is not available for some reason, e.g. Windows machines. It
created an SQLite database where the same queries can be used.
Usage
1
get.ucsc.dbl(org, type, refdb="ucsc")
Arguments
org
one of metaseqR supported organisms.
type
either "gene" or "exon".
refdb
one of "ucsc" or "refseq"
to use the UCSC or RefSeq annotation sources
respectively.
Value
An SQLite database.
Author(s)
Panagiotis Moulos
Examples
1
db.file <- get.ucsc.dbl("hg18","gene","ucsc")
pmoulos/metaseqR-local documentation built on May 9, 2019, 1:13 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Directly downloads UCSC and RefSeq annotation files from UCSC servers to be used with metaseqR. This functionality is used when the package RMySQL is not available for some reason, e.g. Windows machines. It created an SQLite database where the same queries can be used.
Usage
1 | get.ucsc.dbl(org, type, refdb="ucsc")
|
Arguments
org |
one of metaseqR supported organisms. |
type |
either |
refdb |
one of |
Value
An SQLite database.
Author(s)
Panagiotis Moulos
Examples
1 | db.file <- get.ucsc.dbl("hg18","gene","ucsc")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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