API for pmoulos/metaseqR-local
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.

Global functions
as.class.vector Man page Source code
biasPlotToJSON Source code
bioDetectionToJSON Source code
bioSaturationToJSON Source code
boxplotToJSON Source code
build.export Man page Source code
calc.f1score Man page Source code
calc.otr Man page Source code
cddat Man page Source code
cdplot Man page Source code
check.contrast.format Man page Source code
check.file.args Man page Source code
check.graphics.file Man page Source code
check.graphics.type Man page Source code
check.libsize Man page Source code
check.main.args Man page Source code
check.num.args Man page Source code
check.packages Man page Source code
check.parallel Man page Source code
check.text.args Man page Source code
combine.bonferroni Man page Source code
combine.maxp Man page Source code
combine.minp Man page Source code
combine.simes Man page Source code
combine.weight Man page Source code
construct.gene.model Man page Source code
construct.utr.model Man page Source code
correct.transcripts Source code
countsBioToJSON Source code
deprecated.warning Source code
diagplot.avg.ftd Man page Source code
diagplot.boxplot Man page Source code
diagplot.cor Man page Source code
diagplot.de.heatmap Man page Source code
diagplot.edaseq Man page Source code
diagplot.filtered Man page Source code
diagplot.ftd Man page Source code
diagplot.mds Man page Source code
diagplot.metaseqr Man page Source code
diagplot.noiseq Man page Source code
diagplot.noiseq.saturation Man page Source code
diagplot.pairs Man page Source code
diagplot.roc Man page Source code
diagplot.venn Man page Source code
diagplot.volcano Man page Source code
disp Man page Source code
downsample.counts Man page Source code
elap2human Source code
estimate.aufc.weights Man page Source code
estimate.sim.params Man page Source code
filter.exons Man page Source code
filter.genes Man page Source code
filter.high Man page Source code
filter.low Man page Source code
filteredToJSON Source code
fisher.method Man page Source code
fisher.method.perm Man page Source code
fisher.sum Man page Source code
get.alt.host Source code
get.annotation Man page Source code
get.arg Man page Source code
get.biotypes Man page Source code
get.bs.organism Man page Source code
get.dataset Man page Source code
get.defaults Man page Source code
get.ensembl.annotation Man page Source code
get.exon.attributes Man page Source code
get.gc.content Man page Source code
get.gene.attributes Man page Source code
get.host Man page Source code
get.preset.opts Man page Source code
get.strict.biofilter Man page Source code
get.transcript.utr.attributes Man page Source code
get.ucsc.annotation Man page Source code
get.ucsc.credentials Man page Source code
get.ucsc.dbl Man page Source code
get.ucsc.organism Man page Source code
get.ucsc.query Man page Source code
get.ucsc.tabledef Man page Source code
get.ucsc.tbl.tpl Man page Source code
get.valid.chrs Man page Source code
get.weights Man page Source code
getColorScheme Source code
getColors Source code
getGroupColorScheme Source code
graphics.close Man page Source code
graphics.open Man page Source code
hg19.exon.counts Man page
libsize.list.hg19 Man page
libsize.list.mm9 Man page
load.bs.genome Man page Source code
log2disp Man page Source code
make.avg.expression Man page Source code
make.contrast.list Man page Source code
make.export.list Man page Source code
make.fold.change Man page Source code
make.grid Man page Source code
make.highcharts.points Man page Source code
make.html.body Man page Source code
make.html.cells Man page Source code
make.html.header Man page Source code
make.html.rows Man page Source code
make.html.table Man page Source code
make.matrix Man page Source code
make.path.struct Man page Source code
make.permutation Man page Source code
make.project.path Man page Source code
make.report.messages Man page Source code
make.sample.list Man page Source code
make.sim.data.sd Man page Source code
make.sim.data.tcc Man page Source code
make.stat Man page Source code
make.transformation Man page Source code
make.venn.areas Man page Source code
make.venn.colorscheme Man page Source code
make.venn.counts Man page Source code
make.venn.pairs Man page Source code
mdsToJSON Source code
meta.perm Man page Source code
meta.test Man page Source code
meta.worker Man page Source code
metaseqR Man page
metaseqR-package Man page
metaseqR.version Source code
metaseqr Man page Source code
metaseqr.main Man page
mlfo Man page Source code
mm9.gene.counts Man page
nat2log Man page Source code
normalize.deseq Man page Source code
normalize.edaseq Man page Source code
normalize.edger Man page Source code
normalize.nbpseq Man page Source code
normalize.noiseq Man page Source code
read.targets Man page Source code
read2count Man page Source code
readNoiseToJSON Source code
reduce.exons Man page Source code
reduce.gene.data Man page Source code
reduce.transcripts.utr Source code
sample.list.hg19 Man page
sample.list.mm9 Man page
set.arg Man page Source code
stat.bayseq Man page Source code
stat.deseq Man page Source code
stat.edger Man page Source code
stat.limma Man page Source code
stat.nbpseq Man page Source code
stat.noiseq Man page Source code
stopwrap Source code
unquote_js_fun Source code
validate.alg.args Man page Source code
validate.list.args Man page Source code
volcanoToJSON Source code
wapply Man page Source code
warnwrap Source code
wp.adjust Man page Source code
pmoulos/metaseqR-local documentation built on Oct. 23, 2017, 1:19 p.m.