get.ucsc.query: Return queries for the UCSC Genome Browser database,...
In pmoulos/metaseqR: An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/metaseqr.query.R
Description
Returns an SQL query to be used with a connection to
the UCSC Genome Browser database and fetch metaseqR
supported organism annotations. This query is constructed
based on the data source and data type to be returned.
Usage
1
get.ucsc.query(org, type, refdb="ucsc")
Arguments
org
one of metaseqR supported organisms.
type
either "gene" or "exon".
refdb
one of "ucsc" or "refseq"
to use the UCSC or RefSeq annotation sources
respectively.
Value
A valid SQL query.
Author(s)
Panagiotis Moulos
Examples
1
db.query <- get.ucsc.query("hg18","gene","ucsc")
pmoulos/metaseqR documentation built on Dec. 21, 2020, 6:19 a.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/metaseqr.query.R
Description
Returns an SQL query to be used with a connection to the UCSC Genome Browser database and fetch metaseqR supported organism annotations. This query is constructed based on the data source and data type to be returned.
Usage
1 | get.ucsc.query(org, type, refdb="ucsc")
|
Arguments
org |
one of metaseqR supported organisms. |
type |
either |
refdb |
one of |
Value
A valid SQL query.
Author(s)
Panagiotis Moulos
Examples
1 | db.query <- get.ucsc.query("hg18","gene","ucsc")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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