getInstalledAnnotations: List installed sitadela annotations

In pmoulos/sitadela: An R package for the easy provision of simple but complete tab-delimited genomic annotation from a variety of sources and organisms

List installed sitadela annotations

Description

This function returns a data frame with information on locally installed, supported or custom, annotations.

Usage

    getInstalledAnnotations(obj = NULL)

Arguments

obj	NULL or the path to a sitadela SQLite annotation database. If NULL, the function will try to guess the location of the SQLite database.

Value

The function returns a data.frame object with the installed local annotations.

Author(s)

Panagiotis Moulos

Examples

db <- file.path(system.file(package="sitadela"),
    "annotation.sqlite")
if (file.exists(db))
    ig <- getInstalledAnnotations(obj=db)

pmoulos/sitadela documentation built on May 19, 2024, 3:52 a.m.