Man pages for pmtran5884/Glycancc
Community Clustering of Anti-Carbohydrate Antibody data
| cluster_graph | run umap algorithm on igg data |
| compare_clusters_alluvial | Alluvial plot to compare igraph cluster objects |
| convert_to_ggplotformat | convert model stats to ggplot format |
| entropy | entropy/shannon diversity index function |
| forest_plot_lm_model | plot ggplot converted lm model as forest plot |
| glmnet_auc | Calculate the AUC of binomial glmnet model from random number... |
| glycan_class_enrichment | glycan class enrichment analysis |
| join_graphs | combine two igraph objects |
| keep_earliest_samples | Keep earliest sample only for multiple samples |
| knn_network_from_umap | Construct K-nearest neighbors graph from UMAP implementation... |
| load_and_clean_DAISY_data | load and clean DAISY iggdata |
| load_and_clean_PAGODA_data | load and clean PAGODA iggdata |
| load_glycan_classes | Load glycan classes information |
| make_correlation_network | Construct igraph based on pairwise spearman correlations |
| make_eigen_matrix | Make eigen matrix |
| make_umap | run umap algorithm on igg data |
| outliers_to_na | outliers to na |
| plot_cluster_graph | run umap algorithm on igg data |
| plot_significant_cluster_classes | plot result of glycan enrichment analysis as bubble chart on... |
| univariate_models | regression models |
| univariate_radar_chart | rader/spider chart per glycan class |
