make_umap: run umap algorithm on igg data

In pmtran5884/Glycancc: Community Clustering of Anti-Carbohydrate Antibody data

run umap algorithm on igg data

Description

run umap algorithm on igg data

Usage

make_umap(
  datamat,
  n_neighbors = 15,
  min_dist = 0.1,
  metric = "cosine",
  random_state = 123
)

Arguments

datamat	data matrix containing igg data
n_neighbors	number of neighbors to use in umap hyperparameters. Default = 15
min_dist	hyperparameter minimum distance for umap. Default = 0.1
metric	hyperparameter distance metric to use for umap. Default = "cosine"
random_state	umap variable for reproducible results. Default = 123

Value

umap object including k-nearest neighbors results and 2D projection

pmtran5884/Glycancc documentation built on Oct. 5, 2022, 10:14 a.m.