reconstituteGraph: Reconstitute and Graph fit data

In poales/msuRACiFit: Fitting A/Ci data

Reconstitute and Graph fit data

Description

Take fit data and send it back through to make a graph

Usage

reconstituteGraph(
  data,
  fitParams,
  name_assimilation = "A",
  name_ci = c("pCi", "Ci"),
  gammastar = 3.52,
  O2 = 21,
  pressure = 101,
  tleaf = 25,
  ignoreTPU = F,
  Kc = exp(35.9774 - (80.99/(0.008314 * (273.15 + tleaf)))),
  Ko = exp(12.3772 - (23.72/(0.008314 * (273.15 + tleaf))))
)

Arguments

data	The original A/Ci data
fitParams	The returned params data from the fitting function
name_assimilation	The name given to assimilation column in "data"
name_ci	The name given to the internal CO2 concentration column in "data"
gammastar	The Cc compensation point. Default: Tobacco.
O2	The oxygen concentration in parts per hundred.
pressure	Atmospheric pressure in kPa
tleaf	The leaf temperature, in celsius
ignoreTPU	Whether to fit TPU or not. Leave false if you don't know what you're doing!
Kc	Michaelis-menten kinetic parameter for carboxylation
Ko	Michaelis-menten kinetic parameter for oxygenation

poales/msuRACiFit documentation built on Jan. 4, 2024, 3:57 p.m.