make_analysis_data: Make Analysis Data
In poissonconsulting/lexr: Lake Exploitation Study Data Plotting and Analysis

Description Usage Arguments Details Value

Makes analysis_data object from a detect_data object. capture$PeriodCapture indicates the period during which the fish was caught. capture$PeriodTagExpire indicates the period during which the tag expired. detected is a logical matrix indicating for each individual-period whether it was detected during the period. moved is a logical matrix indicating for each individual-period whether it was detected to have moved during the period (based on being detected at multiple sections). reported is a logical matrix indicating for each individual-period whether it was reported to have been recaught during the period. released is a logical matrix indicating for each individual-period whether it was released during the period. tags is a logical array indicating for each individual-period-tbartag whether it was attached at the start of the period (note considered attached at the start of the period during which first caught).

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make_analysis_data(data, capture = data$capture, section = data$section,
  interval_period = get_difftime(data), spawning = spawning_no,
  growth = growth_no, ...)

`data`	A detect_data object to use.
`capture`	A data frame of the capture data to use.
`section`	A data frame of the section data to use.
`interval_period`	A difftime element that will be used to group the interval or a vector indicating the actual interval groupings.
`spawning`	A function that takes detections by date for a capture and period data and returns a logical vector indicating whether the individual spawned in each period.
`growth`	A function that takes the length of a fish at capture and predicts its length after a number of years.
`...`	additional arguments passed to growth.