Man pages for polehalieutique/demerstem
This package aims to falicitate Fish stock assessement for west african partners involved in the EU DEMERSTEM project
| AG | Aggregation function for LBB |
| bgm | Bayesian function (not used for the moment) 'bgm' fonction... |
| bgm2 | Bayesian function (not used for the moment) 'bgm2' fonction... |
| bgm_output_1 | Bayesian function (not used for the moment) 'bgm_output_5'... |
| bgm_output_2 | Bayesian function (not used for the moment) 'bgm_output_5'... |
| bgm_output_3 | Bayesian function (not used for the moment) 'bgm_output_5'... |
| bgm_output_4 | Bayesian function (not used for the moment) 'bgm_output_5'... |
| bgm_output_5 | Bayesian function (not used for the moment) 'bgm_output_5'... |
| BH | B & H equations for LBB |
| captures_aggregees | Tableau de capture et effort de la pêche industrielle /... |
| data_poor_indicators | Estimate some data poors indicators |
| delta_glm | Delta coupling of 2 GLMs |
| evo_an | evolution de l'indice d'abondance moyen dans le temps... |
| evo_facto | evolution de l'abondance par parametre (fonction graphique)... |
| F_abundance | F_abundance |
| F_a_min | F_a_min |
| f.density.bivar | Bayesian function (not used for the moment) 'f.density.bivar'... |
| fox_effort_calculation | Calculate Fox fishing effort |
| fox_model | Fox production model |
| F_pseudo_rectif | Rectified pseudo cohort |
| generalised_model | Generalised production model |
| glm_ai_plus | Fit a Generalized Linear Models on abundance data |
| glm_pres_abs | Fit a Generalized Linear Models on presence/absence data |
| hello | Hello, World! |
| LBB | Length-based Bayesian biomass estimator (LBB) |
| mean_3years | Smooth over 3 years |
| mean_ai | Mean of AI series |
| method_shepherd | Shepherd method |
| mixdist_polymod | Polymodal decomposition |
| M_Lorenzen | Natural mortality estimate |
| moda_facto | moda_facto |
| moda_removal | moda_removal |
| moda_selection | moda_selection |
| model_ai_plus | Abundance-GLM modeling process |
| model_pres_abs | Presence/Absence-GLM modeling process |
| model_weight | Weight size relationship |
| panel.cor | Bayesian function (not used for the moment) 'panel.cor'... |
| panel.dens | Bayesian function (not used for the moment) 'panel.dens'... |
| param_use | param_use 'param_use' nombre de donnees par modalite de... |
| plotLBB | Plotting LBB fit |
| plotLBB.data | Plotting LBB data |
| plotLBB.ts | Plotting LBB results over time |
| plotLBB.year | Plotting LBB fit (single year) |
| pope_abundance | pope_abundance |
| pope_F | pope_F |
| pope_N | pope_N |
| pres_facto | pres_facto |
| R_estimate | R_estimate |
| R_pseudo_rectif | R_pseudo_rectif |
| tableau_pa | Tableau de capture et effort de la pêche artisansale / Guinée |
| tableau_pi | Tableau de capture et effort de la pêche industrielle /... |
| tableau_sc | Tableau de données des campagnes scientifiques / Guinée |
| table_pres_abs | Creating the table used for the GLMs |
| theme_nice | A nice and smoothie theme |
| VPA_Pope | VPA_Pope |
| weight_size | Weight-size equation |
| yield_recrut | Diagnosis on stock from F estimate |
