mcmc.single.write: Write the MCMC History of an Uncoupled 'DICE' Run

In predsci/DICE: DICE: Dynamics of Interacting Community Epidemics

Description

Writes an RData file with the MCMC history for an uncoupled DICE run. The function also calculates and prints to the screen the statistics for all the parameters that were optimized and does a Gaussian fit to these parameters. The results of these fits are written to separate a csv file.

Usage

mcmc.single.write(tab.model = NULL, tab.fit = NULL, opt.list = NULL,
  run.list = NULL, mydata = NULL, imask = NULL, ireal = 1)

Arguments

tab.model	The MCMC history of the direct fit of the model data
tab.fit	The MCMC history of an indirect fit of the model using the fit data
opt.list	A logical list of all the parameters DICE recognizes and can optimize with TRUE/FALSE
run.list	a list with parameters used for the MCMC procedure
mydata	A dataframe with all the data available for this run
imask	An array of integers with +1/-1 values for parameters that are optimized (or not)
ireal	Integer - the MCMC chain number

Value

err Returns err = 0

Examples

mcmc.single.write{tab.model = tab.model, tab.fit = tab.fit, opt.list = opt.list,
run.list = run.list, mydata = mydata, imask = imask, ireal = 1}

predsci/DICE documentation built on Aug. 9, 2019, 9:41 a.m.