set.sars.model: Setup of Parameters for an MCMC SEIR procedure

In predsci/DICE: DICE: Dynamics of Interacting Community Epidemics

Description

set.sars.model Creates the arrays for SEIR modeling of the Plague data with min/max values, step size, and initial guess/default values for all the parameters.

Usage

set.sars.model(mydata = NULL, par_names = NULL, est_bckgrnd = 1,
  opt.list = NULL, run.list = NULL)

Arguments

par_names	A character array with seir parameter names
est_bckgrnd	Numeric, estimated value of background cholera cases
opt.list	A Logical list with TRUE or FALSE values for all the parameters supported by DICE. These values are based on the model used for the basic reproduction number
run.list	A list with parameters needed for the MCMC procedure

Value

A list with min, max, step size and initial guess/default values for the sir parameters

Examples

set.plague.model(mydata = mydata, par_names = par_names, 
est_bckgrnd=1, run.list = run.list, opt.list = opt.list)

predsci/DICE documentation built on Aug. 9, 2019, 9:41 a.m.