setup.coupling.mcmc: Setup For Coupling Parameters

In predsci/DICE: DICE: Dynamics of Interacting Community Epidemics

Description

For a coupled DICE run we setup all the required values for the two parameters that help define the coupling matrix. These include min/max and step size values, initial values, logscale and number of parameters. The two parameters are: the saturation distance s_d in km, and the distance power γ.

Usage

setup.coupling.mcmc(par_names_cpl = NULL, opt.list = NULL)

Arguments

par_names_cpl	An array with the names of the coupling parameters
opt.list	a logical list with TRUE or FALSE values for each

Value

coupling.list A named list with the following arguments:

parmin

Minimum values for the two parameters

parmax

Maximum values for the two parameters

pardx

Step-size for the two parameters

par

Initial values for the two parameters

logbase

Base for log values - currently code assumes base 10

logvec

Array of integers with 1, use log base, or 0 - do not

nparam

Integer-the total number of parameters recognized by the DICE code

nopt

Integer-the number of parameters that will be optimized

Examples

setup.coupling.mcmc{par_names_cpl = par_names_cpl, opt.list=opt.cpl}

predsci/DICE documentation built on Aug. 9, 2019, 9:41 a.m.