createQuadrantGate: Create quadrant gate

In primitybio/cellengine-r-toolkit: 'CellEngine' API Toolkit

Create quadrant gate

Description

Creates a quadrant gate. Quadrant gates have four sectors (upper-right, upper-left, lower-left, lower-right), each with a name and unique gid.

Usage

createQuadrantGate(
  experimentId,
  xChannel,
  yChannel,
  name,
  x,
  y,
  labels = NULL,
  gid = generateId(),
  gids = replicate(4, generateId()),
  parentPopulationId = NULL,
  tailoredPerFile = FALSE,
  fcsFileId = NULL,
  locked = FALSE,
  createPopulations = is.null(fcsFileId)
)

Arguments

experimentId	The ID of the experiment to which to add the gate, or a byName expression.
xChannel	The name of the x channel to which the gate applies.
yChannel	The name of the y channel to which the gate applies.
name	The name of the gate. Each sector is named with this parameter and a quadrant flag (UR, UL, LL, LR).
x	The x coordinate (after the channel's scale has been applied).
y	The y coordinate (after the channel's scale has been applied).
labels	Positions of the quadrant labels. A list of four length-2 vectors in the order: UR, UL, LL, LR. These are set automatically to the plot corners.
gid	Top-level group ID of the gate, used for tailoring. If this is not specified, then a new Group ID will be created. For compound gates, "gid" refers to the top-level GID. Each sector has a unique model gid and name to which populations must refer.
gids	Group IDs of each sector, assigned to model.gids.
parentPopulationId	ID of the parent population or a byName expression. Use UNGATED for the "ungated" population. Only used if createPopulation is TRUE.
tailoredPerFile	Whether or not this gate is tailored per FCS file.
fcsFileId	ID of FCS file or a byName expression, if tailored per file. Use NULL for the global gate in a tailored gate group.
locked	Prevents modification of the gate via the web interface.
createPopulations	Automatically create corresponding populations. Specify parentPopulationId if set to TRUE. Because R performs partial matching of argument names, this can also be specified as createPopulation for consistency with the other create__Gate functions.

Examples

## Not run: 
createQuadrantGate(experimentId, "FSC-A", "FSC-W", "my gate", 160000, 200000)

## End(Not run)

primitybio/cellengine-r-toolkit documentation built on Oct. 19, 2024, 1:17 a.m.