createRectangleGate: Create rectangle gate

In primitybio/cellengine-r-toolkit: 'CellEngine' API Toolkit

Create rectangle gate

Description

Creates a rectangle gate.

Usage

createRectangleGate(
  experimentId,
  xChannel,
  yChannel,
  name,
  x1,
  x2,
  y1,
  y2,
  label = c(mean(c(x1, x2)), mean(c(y1, y2))),
  gid = generateId(),
  parentPopulationId = NULL,
  tailoredPerFile = FALSE,
  fcsFileId = NULL,
  locked = FALSE,
  createPopulation = is.null(fcsFileId)
)

Arguments

experimentId	The ID of the experiment to which to add the gate, or a byName expression.
xChannel	The name of the x channel to which the gate applies.
yChannel	The name of the y channel to which the gate applies.
name	The name of the gate.
x1	The first x coordinate (after the channel's scale has been applied).
x2	The second x coordinate (after the channel's scale has been applied).
y1	The first y coordinate (after the channel's scale has been applied).
y2	The second y coordinate (after the channel's scale has been applied).
label	Position of the label. Defaults to the midpoint of the gate.
gid	Group ID of the gate, used for tailoring. If this is not specified, then a new Group ID will be created.
parentPopulationId	ID of the parent population or a byName expression. Use UNGATED for the "ungated" population. Only used if createPopulation is TRUE.
tailoredPerFile	Whether or not this gate is tailored per FCS file.
fcsFileId	ID of FCS file or a byName expression, if tailored per file. Use NULL for the global gate in a tailored gate group.
locked	Prevents modification of the gate via the web interface.
createPopulation	Automatically create corresponding population. Specify parentPopulationId if set to TRUE.

Examples

## Not run: 
createRectangleGate(experimentId, "FSC-A", "FSC-W", "my gate", 12.502, 95.102, 1020, 32021.2)

## End(Not run)

primitybio/cellengine-r-toolkit documentation built on Oct. 19, 2024, 1:17 a.m.