readGMT: Read a gmt (gene matrix transposed) file
In princyparsana/netpca: GSEA for Principal Components Analysis
Description
Usage
Arguments
Value
Author(s)
Description
Reads a gmt (gene matrix transposed) file as provided by mSigDB or
geneSigDB, to an R list object.
Usage
1
readGMT(fname, name.column = 1)
Arguments
fname
fully specified path to a .gmt file, ie from mSigDB or geneSigDB
name.column
name.column = which column to use for names (typically 1 or 2).
Value
a list object where each element is a string of genes, and the
elements are named by the first column of the .gmt file.
Author(s)
Princy Parsana and Levi Waldron
princyparsana/netpca documentation built on May 25, 2019, 12:20 p.m.
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Description Usage Arguments Value Author(s)
Description
Reads a gmt (gene matrix transposed) file as provided by mSigDB or geneSigDB, to an R list object.
Usage
1 | readGMT(fname, name.column = 1)
|
Arguments
fname |
fully specified path to a .gmt file, ie from mSigDB or geneSigDB |
name.column |
name.column = which column to use for names (typically 1 or 2). |
Value
a list object where each element is a string of genes, and the elements are named by the first column of the .gmt file.
Author(s)
Princy Parsana and Levi Waldron
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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