Man pages for privefl/mypack
Analysis of Massive SNP Arrays

bigSNP-classClass bigSNP
bigsnpr-packagebigsnpr: Analysis of Massive SNP Arrays
download_beagleDownload Beagle 4.1
download_plinkDownload PLINK 1.9
LD.wiki34Long-range LD regions
pruning-clumpingLD pruning and clumping
snp_attachAttach a "bigSNP" from backing files
snp_attachExtdataAttach a "bigSNP" for examples and tests
snp_autoSVDTruncated SVD with pruning
snp_beagleImputeImputation
snp_corCorrelation
snp_fakeFake a "bigSNP"
snp_fastImputeFast imputation
snp_gcGenomic Control
snp_getSampleInfosGet sample information
snp_MAFMAF
snp_manhattanManhattan plot
snp_MAX3MAX3 statistic
snp_pcadaptOutlier detection
snp_plinkIBDQCIdentity-by-descent
snp_plinkQCQuality Control
snp_plinkRmSamplesRemove samples
snp_PRSPRS
snp_qqQ-Q plot
snp_readBedRead PLINK files into a "bigSNP"
snp_saveSave modifications
snp_scaleBinomBinomial(n, p) scaling
snp_splitSplit-parApply-Combine
snp_writeBedWrite PLINK files from a "bigSNP"
subset.bigSNPSubset
privefl/mypack documentation built on Dec. 7, 2017, 12:12 p.m.