API for privefl/mypack
Analysis of Massive SNP Arrays

Global functions
CODE_012	Man page
CODE_DOSAGE	Man page
CODE_IMPUTE_PRED	Man page
FBM_infos	Source code
LD.wiki34	Man page
MLE_alpha	Source code
OADP_proj	Source code
SCT	Man page
WEIGHTS	Source code
ZCATT	Source code
[,bed,ANY,ANY,ANY-method	Man page
as_SFBM	Man page
bed	Man page Source code
bed-class	Man page
bed-methods	Man page
bedClumpingChr	Source code
bedXPtr	Source code
bed_MAF	Man page Source code
bed_RC	Man page
bed_accessor	Source code
bed_autoSVD	Man page Source code
bed_clumping	Man page Source code
bed_clumping_chr	Source code
bed_col_counts_cpp	Source code
bed_colstats	Source code
bed_cor	Man page
bed_counts	Man page Source code
bed_cpMatVec4	Source code
bed_cprodVec	Man page Source code
bed_ld_scores	Man page Source code
bed_pMatVec4	Source code
bed_pcadapt	Man page Source code
bed_prodVec	Man page Source code
bed_projectPCA	Man page Source code
bed_projectSelfPCA	Man page Source code
bed_randomSVD	Man page Source code
bed_row_counts_cpp	Source code
bed_scaleBinom	Man page Source code
bed_tcrossprodSelf	Man page Source code
bigSNP	Man page
bigSNP-class	Man page
bigsnpr	Man page
bigsnpr-package	Man page
center_vec	Source code
check_args	Source code
check_bgen_format	Source code
clumpingChr	Source code
clumping_chr	Source code
clumping_chr_cached	Source code
coef_to_liab	Man page Source code
cor0	Source code
corMat	Source code
crossprod2	Source code
dim,bed-method	Man page
download_1000G	Man page Source code
download_beagle	Man page Source code
download_genetic_map	Man page Source code
download_plink	Man page Source code
download_plink2	Man page Source code
extract_submat_bgen	Source code
flip_strand	Source code
format_snp_id	Source code
getCode	Source code
getIntervals	Source code
getInverseCode	Source code
getLambdaGC	Source code
getNewFile	Source code
get_C	Source code
get_L	Source code
get_os	Source code
get_pattern	Source code
get_perc	Source code
impute	Source code
imputeChr	Source code
lassosum2	Source code
ld0	Source code
ld_scores	Source code
ld_scores_sfbm	Source code
ldpred2_gibbs_auto	Source code
ldpred2_gibbs_one	Source code
ldpred2_gibbs_one_sampling	Source code
length,bed-method	Man page
make_executable	Source code
multLinReg	Source code
part_prod	Source code
pcadapt0	Source code
prodVecRev	Source code
prod_and_rowSumsSq	Source code
prod_bgen2	Source code
read_bed	Source code
read_bed_scaled	Source code
read_bgen	Source code
readbina	Source code
readbina2	Source code
reconstruct_paths	Source code
reexports	Man page
replaceSNP	Source code
same_ref	Man page Source code
seq_log	Man page Source code
snp_MAF	Man page Source code
snp_MAX3	Man page Source code
snp_PRS	Man page Source code
snp_ancestry_summary	Man page Source code
snp_asGeneticPos	Man page Source code
snp_asGeneticPos2	Man page Source code
snp_attach	Man page Source code
snp_attachExtdata	Man page Source code
snp_autoSVD	Man page Source code
snp_beagleImpute	Man page Source code
snp_clumping	Man page Source code
snp_colstats	Source code
snp_cor	Man page
snp_fake	Man page Source code
snp_fastImpute	Man page Source code
snp_fastImputeSimple	Man page Source code
snp_fst	Man page Source code
snp_gc	Man page Source code
snp_getSampleInfos	Man page Source code
snp_grid_PRS	Man page Source code
snp_grid_clumping	Man page Source code
snp_grid_stacking	Man page Source code
snp_indLRLDR	Man page Source code
snp_lassosum2	Man page Source code
snp_ld_scores	Man page Source code
snp_ldpred2_auto	Man page Source code
snp_ldpred2_grid	Man page Source code
snp_ldpred2_inf	Man page Source code
snp_ldsc	Man page Source code
snp_ldsc2	Man page Source code
snp_ldsplit	Man page Source code
snp_manhattan	Man page Source code
snp_match	Man page Source code
snp_modifyBuild	Man page Source code
snp_pcadapt	Man page Source code
snp_plinkIBDQC	Man page Source code
snp_plinkKINGQC	Man page Source code
snp_plinkQC	Man page Source code
snp_plinkRmSamples	Man page Source code
snp_prodBGEN	Man page Source code
snp_pruning	Man page Source code
snp_qq	Man page Source code
snp_readBGEN	Man page Source code
snp_readBGI	Man page Source code
snp_readBed	Man page Source code
snp_readBed2	Man page Source code
snp_save	Man page Source code
snp_scaleAlpha	Man page Source code
snp_scaleBinom	Man page Source code
snp_simuPheno	Man page Source code
snp_split	Man page Source code
snp_subset	Man page Source code
snp_thr_correct	Man page Source code
snp_writeBed	Man page Source code
sp_colSumsSq_sym	Source code
sub_bed	Man page Source code
subset.bigSNP	Man page Source code
sum_transfo_af	Source code
system_verbose	Source code
testWrite	Source code
transform_ind	Source code
wlm	Source code
wlm_no_int	Source code
write.table2	Source code
writebina	Source code