pgxFilter: Query available filters

In progenetix/pgxRpi: R wrapper for Progenetix

Query available filters

Description

This function retrieves available filters in the Progenetix database.

Usage

pgxFilter(
  prefix = NULL,
  return_all_prefix = FALSE,
  domain = "http://progenetix.org",
  dataset = "progenetix"
)

Arguments

prefix	A string specifying the prefix of filters, such as 'NCIT' and 'PMID'. Default is NULL, which means that all available filters will be returned. When specified, it returns all filters with the specified prefix.
return_all_prefix	A logical value determining whether to return all valid prefixes of filters used in Progenetix. If TRUE, the prefix parameter will be ignored. Default is FALSE.
domain	A string specifying the domain of the Progenetix database. Default is "http://progenetix.org".
dataset	A string specifying the dataset to query. Default is "progenetix". Other available options are "cancercelllines".

Value

filter terms used in Progenetix.

Examples

pgxFilter(prefix = "NCIT")

progenetix/pgxRpi documentation built on May 7, 2024, 2:57 p.m.