!!!Caution work in progress!!!
Function optimizes Extraction windows so we have the same number of precursor per window. To do it uses spectral library or non redundant blib.
library(cdsw)
cdsw <- Cdsw(masses) cdsw$plot()
knitr::kable(cdsw$asTable())
constError <-cdsw$error()
quantile
Same number of MS1 precursors in each window
cdsw$quantile_breaks()
cdsw$plot()
knitr::kable(cdsw$asTable())
quantileError <- cdsw$error()
Shifts window start and an to a mass range with few MS1 peaks.
knitr::kable(cdsw$optimizeWindows(maxbin=10,plot=TRUE))
cdsw$sampling_breaks(maxwindow = 100,plot = TRUE)
cdsw$plot()
knitr::kable(cdsw$asTable())
mixedError <-cdsw$error()
barplot(c(const = constError$score1, quantile = quantileError$score1, mixed = mixedError$score1),ylab="Manhattan distance") barplot(c(const = constError$score2, quantile = quantileError$score2, mixed = mixedError$score2),ylab="Euclidean distance")
Here is the output of sessionInfo()
on the system on which this
document was compiled:
sessionInfo()
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.