run_fgsea_for_allContrasts: run for all contrasts
In protViz/fgczgseaora: ORA, sigORA and GSEA functionalities for proteomic data
Description
Usage
Arguments
See Also
Description
run for all contrasts
Usage
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run_fgsea_for_allContrasts(
allrnk,
geneSet,
nperm = 10000,
minSize = 25,
maxSize = 500
)
Arguments
allrnk
list of rank arrays
geneSet
single list geneset (e.g. )
nperm
number permutations
minSize
minimum geneset size
maxSize
maximum geneset size
See Also
Other fgsea:
fgsea_leading_edge_too_char(),
fgsea_msigdb_collections(),
fgsea_msigdb(),
fgsea_rank_contrasts(),
fgsea_rank(),
getMsigdbGenesets(),
run_fgsea_for_allGeneSets()
protViz/fgczgseaora documentation built on Dec. 14, 2021, 9:22 p.m.
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Description Usage Arguments See Also
Description
run for all contrasts
Usage
1 2 3 4 5 6 7 | run_fgsea_for_allContrasts(
allrnk,
geneSet,
nperm = 10000,
minSize = 25,
maxSize = 500
)
|
Arguments
allrnk |
list of rank arrays |
geneSet |
single list geneset (e.g. ) |
nperm |
number permutations |
minSize |
minimum geneset size |
maxSize |
maximum geneset size |
See Also
Other fgsea:
fgsea_leading_edge_too_char(),
fgsea_msigdb_collections(),
fgsea_msigdb(),
fgsea_rank_contrasts(),
fgsea_rank(),
getMsigdbGenesets(),
run_fgsea_for_allGeneSets()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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