sigora_upsetR: UpSetR wrapper for sigora results

Description Usage Arguments Examples

View source: R/sigoraWrappR.R

Description

UpSetR wrapper for sigora results

Usage

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sigora_upsetR(sigora_res, GPStable, ...)

Arguments

sigora_res

Object returned by the sigoraWrappR function

GPStable

Object returned by makeGPS_wrappR function, setting dev=TRUE

...

other parameters to upset

Examples

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sigora_res <- prora::sigora_example
GPStable <- prora::GPStab

sigora_upsetR(sigora_res, GPStable)


df <- get_UniprotID_from_fasta_header(prora::exampleContrastData)
myGPSrepo <- makeGPS_wrappR(ids = df$UniprotID)
names(myGPSrepo)
res <- sigoraWrappR(df,score_col = "estimate", GPSrepos = myGPSrepo$gps,
                     threshold = 0.5)
sigora_upsetR(res, myGPSrepo$gpsTable)

protViz/fgczgseaora documentation built on Dec. 14, 2021, 9:22 p.m.