API for protViz/protViz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Global functions
AA Man page
FASTA Man page
Fasta Man page
HexNAc Man page
NN Man page
PTM_MarkerFinder Man page Source code
PTM_MarkerFinder_ Source code
PTM_MarkerFinder_no_peakplot Source code
PTM_MarkerFinder_summaryPlot Source code
PTM_MarkerFinder_util Man page Source code
PTM_MarkerFinder_writeMGF Source code
PTM_MarkerFinder_writeMGF_Header Source code
aa2mass Man page Source code
apex Man page
as.data.frame.mascot Man page Source code
as.data.frame.pepxml Source code
as.data.frame.psmSet Man page Source code
as.psm Source code
as.psm.mascot_query Man page Source code
as.psmSet Man page Man page Source code
as.psmSet.mascot Man page Source code
averagine Man page
bymatrix Man page
de_novo Man page Source code Source code
de_novo_rev Source code
defaultIon Man page Source code
deisotoper Man page Source code
deisotoperUtilPlot Source code
empai Man page
fasta Man page
featureDensityPlot Source code
fetuinLFQ Man page
findMz Man page Source code
findMz.mascot Man page Source code
findMz.psmSet Man page Source code
findNN Man page Source code
findNN_ Man page Source code
fragmentIon Man page Source code
gasPhaseFragQuantiles Source code
genMod Man page Source code
get_ Source code
get_mascot_protein_hits Source code
get_ms2 Source code
get_q_peptide Source code
hydrophobicity Man page
iRT Man page
iRTpeptides Man page
iTRAQ Man page
iTRAQ2GroupAnalysis Man page Source code
ionseries Man page
irt Man page
is.mascot Man page Source code
is.mascot_query Man page Source code
is.psm Man page Source code
is.psmSet Man page Source code
lcmsmap Man page Source code
lcmsoverview Man page
lower_bound_ Man page Source code
mascot Man page
massDeviationPlot Man page
mdp Man page Source code
mdp_get Source code
msms Man page
onAttach Source code
pPTM Man page
parentIonMass Man page Source code
peakplot Man page Source code
peakplot.label Man page Source code
peakplot.pie Man page Source code
peakplot.putlabel Man page Source code
pep3d Man page
pepmass Man page
peptide2mgf Source code
pgImporter Man page Source code
pgLFQaov Man page Source code
pgLFQfeature Man page
pgLFQprot Man page
pgLFQtNpq Man page Source code
pim Man page
plot.mascot Man page Source code
plot.mascot_query Man page Source code
plot.psm Man page Source code
plot.psmSet Man page Source code
ppp Man page Source code
pps Man page Source code
pressureProfile Man page
pressureProfilePlot Man page
pressureProfileSummary Man page
protViz Man page
psm Man page Source code
ssrc Man page Source code Source code
ssrc.mascot Source code
summary.mascot Man page Source code
summary.psmSet Man page Source code
t3pq Man page
tNpq Man page
protViz/protViz documentation built on Dec. 7, 2017, 1 p.m.