clump_snps: Clumping procedure for SLOPE

In psobczyk/geneSLOPE: Genome-Wide Association Study with SLOPE

Description

Clumping procedure performed on SNPs, columns of matrix X, from object of class screeningResult, which is an output of function screen_snps. SNPs are clustered based on their correlations. For details see package vignette.

Usage

clump_snps(screenResult, rho = 0.5, pValues = NULL, verbose = TRUE)

Arguments

screenResult	object of class screeningResult
rho	numeric, minimal correlation between two SNPs to be assigned to one clump
pValues	numeric vector, p-values for SNPs computed outside geneSLOPE, eg. with EMMAX
verbose	logical, if TRUE (default) progress bar is shown

Value

object of class clumpingResult

psobczyk/geneSLOPE documentation built on March 19, 2018, 5:12 a.m.