clump_snps: Clumping procedure for SLOPE
In psobczyk/geneSLOPE: Genome-Wide Association Study with SLOPE
Description
Usage
Arguments
Value
Description
Clumping procedure performed on SNPs, columns of matrix X, from
object of class screeningResult,
which is an output of function screen_snps.
SNPs are clustered based on their correlations. For details see package vignette.
Usage
1
clump_snps(screenResult, rho = 0.5, pValues = NULL, verbose = TRUE)
Arguments
screenResult
object of class screeningResult
rho
numeric, minimal correlation between two SNPs to be assigned to one clump
pValues
numeric vector, p-values for SNPs computed outside geneSLOPE,
eg. with EMMAX
verbose
logical, if TRUE (default) progress bar is shown
Value
object of class clumpingResult
psobczyk/geneSLOPE documentation built on June 21, 2019, 10:50 a.m.
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Description Usage Arguments Value
Description
Clumping procedure performed on SNPs, columns of matrix X, from
object of class screeningResult,
which is an output of function screen_snps.
SNPs are clustered based on their correlations. For details see package vignette.
Usage
1 | clump_snps(screenResult, rho = 0.5, pValues = NULL, verbose = TRUE)
|
Arguments
screenResult |
object of class screeningResult |
rho |
numeric, minimal correlation between two SNPs to be assigned to one clump |
pValues |
numeric vector, p-values for SNPs computed outside geneSLOPE, eg. with EMMAX |
verbose |
logical, if TRUE (default) progress bar is shown |
Value
object of class clumpingResult
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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