clump_snps | R Documentation |
Clumping procedure performed on SNPs, columns of matrix X
, from
object of class screeningResult
,
which is an output of function screen_snps
.
SNPs are clustered based on their correlations. For details see package vignette.
clump_snps(screenResult, rho = 0.5, pValues = NULL, verbose = TRUE)
screenResult |
object of class screeningResult |
rho |
numeric, minimal correlation between two SNPs to be assigned to one clump |
pValues |
numeric vector, p-values for SNPs computed outside geneSLOPE, eg. with EMMAX |
verbose |
logical, if TRUE (default) progress bar is shown |
object of class clumpingResult
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