radialplot | R Documentation |
Implementation of a graphical device developed by Rex Galbraith to display several estimates of the same quantity that have different standard errors. Serves as a vehicle to display finite and continuous mixture models.
radialplot(x, ...)
## Default S3 method:
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
transformation = "log",
sigdig = 2,
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
k = 0,
np = 3,
markers = NULL,
oerr = 3,
units = "",
hide = NA,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'other'
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
xlim = NULL,
transformation = "log",
sigdig = 2,
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
k = 0,
np = 3,
markers = NULL,
oerr = 3,
units = "",
hide = NA,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'fissiontracks'
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
xlim = NULL,
transformation = "arcsin",
sigdig = 2,
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
markers = NULL,
k = 0,
np = 3,
exterr = FALSE,
oerr = 3,
hide = NULL,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'UPb'
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
xlim = NULL,
transformation = "log",
type = 4,
cutoff.76 = 1100,
cutoff.disc = discfilter(),
show.numbers = FALSE,
pch = 21,
sigdig = 2,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
markers = NULL,
k = 0,
np = 3,
exterr = FALSE,
common.Pb = 0,
oerr = 3,
hide = NULL,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'PbPb'
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
xlim = NULL,
sigdig = 2,
transformation = "log",
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
markers = NULL,
k = 0,
np = 3,
exterr = FALSE,
common.Pb = 2,
oerr = 3,
hide = NULL,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'ArAr'
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
xlim = NULL,
sigdig = 2,
transformation = "log",
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
markers = NULL,
k = 0,
np = 3,
exterr = FALSE,
i2i = FALSE,
oerr = 3,
hide = NULL,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'KCa'
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
xlim = NULL,
sigdig = 2,
transformation = "log",
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
markers = NULL,
k = 0,
np = 3,
exterr = FALSE,
i2i = FALSE,
oerr = 3,
hide = NULL,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'ThPb'
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
xlim = NULL,
sigdig = 2,
transformation = "log",
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
markers = NULL,
k = 0,
np = 3,
exterr = FALSE,
i2i = TRUE,
oerr = 3,
hide = NULL,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'UThHe'
radialplot(
x,
from = NA,
to = NA,
xlim = NULL,
z0 = NA,
sigdig = 2,
transformation = "log",
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
markers = NULL,
k = 0,
np = 3,
oerr = 3,
hide = NULL,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'ReOs'
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
xlim = NULL,
sigdig = 2,
transformation = "log",
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
markers = NULL,
k = 0,
np = 3,
exterr = FALSE,
i2i = TRUE,
oerr = 3,
hide = NULL,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'SmNd'
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
xlim = NULL,
sigdig = 2,
transformation = "log",
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
markers = NULL,
k = 0,
np = 3,
exterr = FALSE,
i2i = TRUE,
oerr = 3,
hide = NULL,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'RbSr'
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
xlim = NULL,
sigdig = 2,
transformation = "log",
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
markers = NULL,
k = 0,
np = 3,
exterr = FALSE,
i2i = TRUE,
oerr = 3,
hide = NULL,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'LuHf'
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
xlim = NULL,
sigdig = 2,
transformation = "log",
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
markers = NULL,
k = 0,
np = 3,
exterr = FALSE,
i2i = TRUE,
oerr = 3,
hide = NULL,
omit = NULL,
omit.col = NA,
...
)
## S3 method for class 'ThU'
radialplot(
x,
from = NA,
to = NA,
z0 = NA,
xlim = NULL,
sigdig = 2,
transformation = "log",
show.numbers = FALSE,
pch = 21,
levels = NA,
clabel = "",
bg = c("yellow", "red"),
col = "black",
markers = NULL,
k = 0,
np = 3,
Th0i = 0,
oerr = 3,
hide = NULL,
omit = NULL,
omit.col = NA,
...
)
x |
Either an OR and object of class |
... |
additional arguments to the generic |
from |
minimum age limit of the radial scale |
to |
maximum age limit of the radial scale |
z0 |
central value |
transformation |
one of either |
sigdig |
the number of significant digits of the numerical values reported in the title of the graphical output. |
show.numbers |
boolean flag ( |
pch |
plot character (default is a filled circle) |
levels |
a vector with additional values to be displayed as different background colours of the plot symbols. |
clabel |
label of the colour legend |
bg |
Fill colour for the plot symbols. This can either be a
single colour or multiple colours to form a colour ramp (to be
used if a single colour: multiple colours: a colour palette: a reversed palette: for plot symbols, set |
col |
text colour to be used if |
k |
number of peaks to fit using the finite mixture models of
Galbraith and Laslett (1993). Setting |
np |
number of parameters for the minimum age model. Must be either 3 or 4. |
markers |
vector of ages of radial marker lines to add to the plot. |
oerr |
indicates whether the analytical uncertainties of the output are reported in the plot title as:
|
units |
measurement units to be displayed in the legend. |
hide |
vector with indices of aliquots that should be removed from the radial plot. |
omit |
vector with indices of aliquots that should be plotted but omitted from the central age calculation or mixture models. |
omit.col |
colour that should be used for the omitted aliquots. |
xlim |
maximum limit of the x-axis. If provided as a vector, uses the last value of that vector and ignores the first one. |
exterr |
include the external sources of uncertainty into the error propagation for the central age and mixture models? |
type |
scalar indicating whether to plot the
|
cutoff.76 |
the age (in Ma) below which the
|
cutoff.disc |
discordance cutoff filter. This is an object of
class |
common.Pb |
common lead correction:
|
i2i |
‘isochron to intercept’: calculates the initial
(aka ‘inherited’, ‘excess’, or ‘common’) Note that choosing this option introduces a degree of circularity in the central age calculation. In this case the radial_plot plot just serves as a way to visualise the residuals of the data around the isochron, and one should be careful not to over-interpret the numerical output. |
Th0i |
initial
|
The radial plot (Galbraith, 1988, 1990) is a graphical device that
was specifically designed to display heteroscedastic data, and is
constructed as follows. Consider a set of dates
\{t_1,...,t_i,...,t_n\}
and uncertainties
\{s[t_1],...,s[t_i],...,s[t_n]\}
. Define z_i = z[t_i]
to be a transformation of t_i
(e.g., z_i = log[t_i]
),
and let s[z_i]
be its propagated analytical uncertainty
(i.e., s[z_i] = s[t_i]/t_i
in the case of a logarithmic
transformation). Create a scatter plot of (x_i,y_i)
values,
where x_i = 1/s[z_i]
and y_i = (z_i-z_\circ)/s[z_i]
,
where z_\circ
is some reference value such as the mean. The
slope of a line connecting the origin of this scatter plot with any
of the (x_i,y_i)
s is proportional to z_i
and, hence,
the date t_i
.
These dates can be more easily visualised by drawing a radial scale at some convenient distance from the origin and annotating it with labelled ticks at the appropriate angles. While the angular position of each data point represents the date, its horizontal distance from the origin is proportional to the precision. Imprecise measurements plot on the left hand side of the radial plot, whereas precise age determinations are found further towards the right. Thus, radial plots allow the observer to assess both the magnitude and the precision of quantitative data in one glance.
does not produce any numerical output, but does report the central age and the results of any mixture modelling in the title. An asterisk is added to the plot title if the initial daughter correction is based on an isochron regression, to highlight the circularity of using an isochron to compute a central age, and to indicate that the reported uncertainties do not include the uncertainty of the initial daughter correction. This is because this uncertainty is neither purely random nor purely systematic.
Galbraith, R.F., 1988. Graphical display of estimates having differing standard errors. Technometrics, 30(3), pp.271-281.
Galbraith, R.F., 1990. The radial plot: graphical assessment of spread in ages. International Journal of Radiation Applications and Instrumentation. Part D. Nuclear Tracks and Radiation Measurements, 17(3), pp.207-214.
Galbraith, R.F. and Laslett, G.M., 1993. Statistical models for mixed fission track ages. Nuclear Tracks and Radiation Measurements, 21(4), pp.459-470.
peakfit
, central
attach(examples)
radialplot(FT1)
dev.new()
radialplot(LudwigMixture,k='min')
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