Man pages for pwatrick/systematicRepurposing
Integrates Transriptomics and Clinical Data to Identify Drug Repurposing Candidates
| add_subanalysis_flags | Flag patients for subanalysis, stratified on exposure to... |
| analyze_clinical_data | Processes clinical data and outputs table summarizing... |
| antihypertensive_drugs_20201205130236 | antihypertensive_drugs_20201205130236 |
| clean_process_clinical_data | Cleans and processes clinical data extracted from EHR... |
| define_observation_periods | Define baseline and treatment periods Last updated:... |
| extract_clinical_data | Function to extract clinical data from All of Us dataset Last... |
| lipid_drugs_20201217141539 | lipid_drugs_20201217141539 |
| map_drugs_to_ingredients | For drug repurposing EHR validation studies, map patient... |
| measure_treatment_effect | Measure treatment effect in clinical data Last updated:... |
| observation_period_drug_exposures | Get baseline and treatment period drug exposures Last... |
| process_biomarker | Process biomarkers data Last updated: 2021-02-10 |
| process_covariates | Process covariates data: keep only adult patients, calculate... |
| show_results_table | Show results table Last updated: 2021-02-14 |
