extract_clinical_data: Function to extract clinical data from All of Us dataset Last...

In pwatrick/systematicRepurposing: Integrates Transriptomics and Clinical Data to Identify Drug Repurposing Candidates

Description

Function to extract clinical data from All of Us dataset Last updated: 2021-03-10

Usage

extract_clinical_data(
  drug_concept_id,
  biomarker_concept_id,
  table_name,
  table_type,
  indication_drug_concept_ids
)

Arguments

drug_concept_id	A string
biomarker_concept_id	A string
table_name	A string
table_type	A string, either c("covariates", "drugs", "biomarkers")
indication_drug_concept_ids	A string, with concept_ids for indication drugs, eg, "(drug_concept_id,1551803,19011061,1351115,1558242,19004048,19051463,19018419,1510813, 1501617,1592085,1545958,1549686,46275447,1551860,19082770,1586226,19095309,46274162,957797, 1517824,46287466,19022956,40165636,1518148,19026600,1539403,1526475)"

pwatrick/systematicRepurposing documentation built on March 24, 2021, 5:49 p.m.