Man pages for pwhigham/spatibm
A Spatial Individual-based model for land-based organisms
| allele.fixation | Allele fixation |
| baseline.breeding | Create population available for breeding |
| baseline.survival | Baseline survival for individuals |
| breed | Breed valid individuals |
| breeding.pairs | Construct breeding pairs of males/females |
| breeding.table | Define breeding parameters |
| build.population.graph | Build a graph for a list of populations |
| circle.habitat | Define a circular habitat |
| circle.only | Define a circular habitat with constant value |
| circle.pts.density | Define a set of circular point habitats |
| convex.home.range | Estimate home range for a movement parameter |
| create.ibm.population | Create an initial population |
| crowding.survival | Determine survival due to crowding |
| crowding.table | Define crowding table |
| do.breeding | Breed a pair of individuals |
| fixation | Time to fixation for an spatial individual-based model |
| F.stat | Calculate Wright F statistic for a population |
| layout.as.tree | Create a tree-style layout for igraph |
| make_rpois_num | Generate a Poisson stationary set of N points within the... |
| model.summary | Create summary table for a model run |
| move | Move the individuals in the population using the defined... |
| movement.table | Define movement parameters for individuals |
| multiple.step | Perform multiple steps (generations) for the population |
| multiple.step.habitat | Perform multiple steps (generations) for the population,... |
| origin.density | Create a table of densities about the origin |
| panmictic.fixation | Time to fixation for a neutral allele |
| plot.all.gens | Plot all generations of a model as points |
| plot.crowding.table | Plot the crowding table |
| plot.density.example | Density plot for a given number of points and bandwidth |
| plot.pop.count | Plot total population |
| plot.population.graph | Plot the population as a family tree |
| plot.survival | Create plot showing probability of survival over time |
| points.habitat | Define a set of locations with a circular habitat |
| popsize.survival | What population size is viable? |
| pop.summary | Population summary statistics |
| single.step | Perform a single (generation) step for the population |
| survival.table | Define survival parameters for individuals |
