plot.all.gens: Plot all generations of a model as points

In pwhigham/spatibm: A Spatial Individual-based model for land-based organisms

Description

Plot all generations of a model run, one plotting window per generation. Note that the number of plotting windows needs to be set prior to calling (probably using par(mfrow=c(r,c),...).

Usage

plot.all.gens(p.list, xlim = NA, ylim = NA, cex = 0.7, pch = 16, ...)

Arguments

p.list	List of populations as .ppp, probably produced by running a model.
xlim, ylim	Required explicitly if used, since plot.ppp uses the .ppp window as the default window to scale the plot.
cex	Size of points used for plotting
pch	Point type
...	Other graphical parameters

Examples

# Create a default population
p <- create_ibm_population()
# Create bigger window for population to expand
p$window <- owin(c(-50,50),c(-50,50),unitname="metres")
# Use default parameters for behaviour.
pm <- multiple.step(steps=5,curr.pop=p,move.table=movement.table(),
survival.table(),breeding.table(),habitat.surface=NA,crowding.table())
op <- par(mfrow=c(2,3),mar=c(1,1,0.5,0.5))  # setup graphics
plot.all.gens(pm)
par(op) # reset graphics

pwhigham/spatibm documentation built on Aug. 30, 2019, 1:16 p.m.