plotM2: Plot M2 of each species by size

In pwoodworth-jefcoats/Size-Based-Modeling: Mizer With The Effects Of Temperature Included

Plot M2 of each species by size

Description

After running a projection, plot M2 of each species by size. M2 is averaged over the specified time range (a single value for the time range can be used to plot a single time step).

Plot M2 using a therMizerSim object.

Usage

plotM2(object, ...)

## S4 method for signature 'therMizerSim'
plotM2(object,
  time_range = max(as.numeric(dimnames(object@n)$time)), print_it = TRUE,
  ...)

Arguments

object	An object of class therMizerSim
...	Other arguments to pass to getM2 method.
time_range	The time range (either a vector of values, a vector of min and max time, or a single value) to average the abundances over. Default is the final time step.
print_it	Display the plot, or just return the ggplot2 object

Value

A ggplot2 object

See Also

getM2

getM2

Examples

## Not run: 
data(NS_species_params_gears)
data(inter)
params <- therMizerParams(NS_species_params_gears, inter)
sim <- project_therMizer(params, effort=1, t_max=20, t_save = 2)
plotM2(sim)
plotM2(sim, time_range = 10:20)

## End(Not run)

pwoodworth-jefcoats/Size-Based-Modeling documentation built on Sept. 15, 2023, 8:13 a.m.