bootstrap.ParTab: Create Parameter Table from NONMEM Bootsrap

In qPharmetra/qpToolkit: qPharmetra R Tools

Create Parameter Table from NONMEM Bootsrap

Description

Creates parameter table from NONMEM bootstrap.

Usage

bootstrap.ParTab(
  bootstrap,
  idx = list(theta = 1, omega = 1, sigma = 1),
  probs = 0.95,
  central = median,
  digits = 3,
  latex = FALSE,
  align.dot = FALSE,
  transformations
)

Arguments

bootstrap	A bootstrap object (list) created by read.bootstrap.
idx	list of which parameters to include.
probs	The confidence interval coverage.
central	function for central tendency of distribution
digits	number of significant digits in output
latex	passed to formatted.signif
align.dot	passed to formatted.signif
transformations	a list with elements log or logit, that, in turn, are numeric vectors representating the THETA numbers that are logged or logit-transformed, respectively.

Value

A data.frame with the bootstrap estimates.

Examples

myBoot = read.bootstrap(
 path = getOption("qpExampleDir"),
 filename = "bootstrap/raw_results_bs4011.csv",
 structure.filename = "bootstrap/raw_results_structure"
)
bootstrap.ParTab(myBoot, idx = list(theta = 1:13,omega = 1:7,sigma = 1))
bootstrap.ParTab(myBoot, idx = list(theta = 1:13,omega = 1:7,sigma = 1))[c(13,14,15),]
bootstrap.ParTab(myBoot, idx = list(theta = 1:13,omega = 1:7,sigma = 1),
transformations = list(log = 13:14, logit = 15))[c(13,14,15),] # partly fictional

qPharmetra/qpToolkit documentation built on May 24, 2023, 8:52 a.m.