get.covmat: Get the covariance matrix

In qPharmetra/qpToolkit: qPharmetra R Tools

Get the covariance matrix

Description

Get the covariance matrix from a completed NONMEM run. If the the run has been zipped, the file will be extracted, then parsed and thereafter the file (not the zipped file) will be discarded.

Usage

get.covmat(
  run,
  path = paste(getwd(), "NONMEM", sep = "/"),
  ext = "cov",
  zip.extension = "7z"
)

Arguments

run	run rootname (e.g. run1)
path	directory where run output resides
ext	extension of the covariance
zip.extension	extension of the zip program. Defaults to "7z"

Value

list with covariance matrices for each estimation method

See Also

nm.covmat.extract, extract.varcov

Examples

get.covmat("example2", path = getOption("qpExampleDir"))

qPharmetra/qpToolkit documentation built on May 24, 2023, 8:52 a.m.