getKaKs: getKaKs compares Ka/Ks between different groups
In qingjian1991/MPTevol: Clonal Evolutionary History and Metastatic Routines Analysis for Multiple Primary Tumors
getKaKs R Documentation
getKaKs compares Ka/Ks between different groups
Description
getKaKs compares Ka/Ks between different groups
Usage
getKaKs(df, vaf.cutoff = 0.05)
Arguments
df
data. Six columns are required to calculate the Ka/Ks,
including "Tumor_Sample_Barcode","Chromosome","Start_Position",
"Reference_Allele","Tumor_Seq_Allele2" and "VAF".
vaf.cutoff
VAF cutoff. Removing mutations with low variant allele frequency (VAF).
Details
The Ka/Ks is calculated by dndscv::dndscv()
qingjian1991/MPTevol documentation built on Jan. 30, 2023, 10:16 p.m.
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| getKaKs | R Documentation |
getKaKs compares Ka/Ks between different groups
Description
getKaKs compares Ka/Ks between different groups
Usage
getKaKs(df, vaf.cutoff = 0.05)
Arguments
df |
data. Six columns are required to calculate the Ka/Ks, including "Tumor_Sample_Barcode","Chromosome","Start_Position", "Reference_Allele","Tumor_Seq_Allele2" and "VAF". |
vaf.cutoff |
VAF cutoff. Removing mutations with low variant allele frequency (VAF). |
Details
The Ka/Ks is calculated by dndscv::dndscv()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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