Files in qizhengyang2017/methylKit_1.8.1
DNA methylation analysis from high-throughput bisulfite sequencing results
.Rinstignore
DESCRIPTION
NAMESPACE
NEWS
R/RcppExports.R
R/adjust.methylC.R
R/backbone.R
R/batchControl.R
R/bedgraph.R
R/clusterSamples.R
R/dataSim.R
R/deprecated_defunct.R
R/diffMeth.R
R/diffMethDSS.R
R/document_data.R
R/methSeg.R
R/methylDBClasses.R
R/methylDBFunctions.R
R/methylKit.R
R/normalizeCoverage.R
R/onUnload.R
R/percMethylation.R
R/pool.R
R/processBismarkAln.R
R/regionalize.R
R/reorganize.R
R/tabix.functions.R
R/updateMethObject.R
README.md
build/vignette.rds
data/methylKit.RData
inst/CITATION
inst/doc/methylKit.R
inst/doc/methylKit.Rmd
inst/doc/methylKit.html
inst/extdata/control1.myCpG.txt
inst/extdata/control2.myCpG.txt
inst/extdata/cpgi.hg18.bed.txt
inst/extdata/ctrl.bismark_paired_end.sorted.bam
inst/extdata/ctrl.bismark_paired_end.sorted.wh.sam
inst/extdata/ctrl1.txt.bgz
inst/extdata/ctrl2.txt.bgz
inst/extdata/generic1.CpG.txt
inst/extdata/refseq.hg18.bed.txt
inst/extdata/test.bismark_single_end.sorted.bam
inst/extdata/test.bismark_single_end.sorted.wh.sam
inst/extdata/test.fastq_bismark.sorted.min.sam
inst/extdata/test.fastq_bismark.unsorted.min.sam
inst/extdata/test.fastq_bismark.unsorted_chr.min.sam
inst/extdata/test1.myCpG.txt
inst/extdata/test1.txt.bgz
inst/extdata/test1_test2_ctrl1_ctrl2.txt.bgz
inst/extdata/test1_test2_ctrl1_ctrl2_diffMeth.txt.bgz
inst/extdata/test2.myCpG.txt
inst/extdata/test2.txt.bgz
inst/methylKit_logo.png
inst/scripts/create.data.R
man/PCASamples-methods.Rd
man/adjustMethylC.Rd
man/assocComp-methods.Rd
man/bedgraph-methods.Rd
man/calculateDiffMeth-methods.Rd
man/calculateDiffMethDSS-methods.Rd
man/clusterSamples-methods.Rd
man/dataSim-methods.Rd
man/diffMethPerChr-methods.Rd
man/extract-methods.Rd
man/filterByCoverage-methods.Rd
man/genomation-deprecated.Rd
man/getAssembly-methods.Rd
man/getContext-methods.Rd
man/getCorrelation-methods.Rd
man/getCoverageStats-methods.Rd
man/getDBPath-methods.Rd
man/getData-methods.Rd
man/getMethylDiff-methods.Rd
man/getMethylationStats-methods.Rd
man/getSampleID-methods.Rd
man/getTreatment-methods.Rd
man/joinSegmentNeighbours.Rd
man/makeMethylDB-methods.Rd
man/methRead-methods.Rd
man/methSeg.Rd
man/methSeg2bed.Rd
man/methylBase-class.Rd
man/methylBase.obj.Rd
man/methylBaseDB-class.Rd
man/methylDiff-class.Rd
man/methylDiff.obj.Rd
man/methylDiffDB-class.Rd
man/methylRaw-class.Rd
man/methylRawDB-class.Rd
man/methylRawList-class.Rd
man/methylRawList.obj.Rd
man/methylRawListDB-class.Rd
man/normalizeCoverage-methods.Rd
man/percMethylation-methods.Rd
man/pool-methods.Rd
man/processBismarkAln-methods.Rd
man/reconstruct-methods.Rd
man/regionCounts.Rd
man/removeComp-methods.Rd
man/reorganize-methods.Rd
man/select-methods.Rd
man/selectByOverlap-methods.Rd
man/show-methods.Rd
man/tileMethylCounts-methods.Rd
man/unite-methods.Rd
man/updateMethObject.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/methCall.cpp
