getData-methods: get the data slot from the methylKit objects

In qizhengyang2017/methylKit_1.8.1: DNA methylation analysis from high-throughput bisulfite sequencing results

Description

The functions retrieves the table containing methylation information from methylKit Objects. The data retrived from this function is of a data.frame. This is basically containing all relevant methylation information per genomic region or base.

Usage

getData(x)

## S4 method for signature 'methylBase'
getData(x)

## S4 method for signature 'methylRaw'
getData(x)

## S4 method for signature 'methylDiff'
getData(x)

## S4 method for signature 'methylRawDB'
getData(x)

## S4 method for signature 'methylBaseDB'
getData(x)

## S4 method for signature 'methylDiffDB'
getData(x)

Arguments

x	an methylBase,methylBaseDB, methylRaw,methylRawDB or methylDiff object

Value

data frame for methylation events

Examples

data(methylKit)

# following commands show first lines of returned 
# data.frames from getData() function
head(
getData(methylBase.obj)
)

head( getData(methylDiff.obj))

head(getData(methylRawList.obj[[1]]))

qizhengyang2017/methylKit_1.8.1 documentation built on May 5, 2019, 7:58 p.m.