dot-cbea: Internal cbea function

In qpmnguyen/CBEA: Competitive Balances for Taxonomic Enrichment Analysis in R

Internal cbea function

Description

See main function cbea documentation for more details.

Usage

.cbea(
  ab_tab,
  set_list,
  output,
  distr,
  adj = FALSE,
  n_perm = 100,
  parametric = TRUE,
  thresh = 0.05,
  init = NULL,
  control = NULL,
  parallel_backend = NULL,
  ...
)

Arguments

ab_tab	(Matrix). Named n by p matrix. This is the OTU/ASV/Strain table where taxa are columns.
set_list	(List). List of length m. This is a list of set membership by column names.
output	See documentation cbea
distr	See documentation cbea
adj	See documentation cbea
n_perm	See documentation cbea
parametric	See documentation cbea
thresh	See documentation cbea
init	See documentation cbea
control	See documentation cbea
parallel_backend	See documentation cbea
...	See documentation cbea

Value

A data.frame of size n by m. n is the total number of samples and m is the total number of sets with elements represented in the data.

qpmnguyen/CBEA documentation built on April 4, 2022, 7:25 p.m.