fit_scores: Function to compute CBEA scores for each set

In qpmnguyen/CBEA: Competitive Balances for Taxonomic Enrichment Analysis in R

Function to compute CBEA scores for each set

Description

Function to compute CBEA scores for each set

Usage

fit_scores(
  index_vec,
  ab_tab,
  adj,
  distr,
  output,
  n_perm,
  parametric,
  thresh,
  init,
  control
)

Arguments

index_vec	(Character Vector). A character vector indicating the elements of the set of interest
ab_tab	(Matrix). Named n by p matrix. This is the OTU/ASV/Strain table where taxa are columns.
adj	(Logical). See documentation cbea
distr	(Character). See documentation cbea
output	(Character). See documentation cbea
n_perm	(Numeric). The total number of permutations.
parametric	(Logical). See documentation cbea
thresh	(Numeric). See documentation cbea
init	(List). See documentation cbea
control	(List). See documentation cbea

Value

This function returns a list containing output scores and other diagnostics (as sublists)

qpmnguyen/CBEA documentation built on April 4, 2022, 7:25 p.m.