get.W: Record genes W

In qsz13/LANDD: Liquid Association for Network Dynamics Detection

Description

get.W() creates a table to record Gene Ontology Biological Process mapping results. Every gene x takes a row.

Usage

get.W(graph, laresult, z.matrix, cutoff, k = 2)

Arguments

graph	The graph of gene network.
laresult	The result of lascouting which finds the liquid association scouting genes.
z.matrix	A matrix representing gene Z (selected scouting genes). Row names are the gene id in gene network.
cutoff	The threshold to find LA scouting genes.
k	An Integer giving the order of the network.

Details

get.W() generates a result file of ego gene X, genes within k steps of X, the liquid association scouting genes of x and genes W.Every gene x takes a row in the table.

Value

A table records the intermediate result of Gene Ontology Biological Process which contains ego gene X, genes within k steps of X, the liquid association scouting genes of x and genes W.Each x occupies a row.

Examples

## Not run:  
laresult <- lascouting(g,m,k=2,n.cores=4)  
get.W(g,laresult,z,cutoff=0.8,k=2)
## End(Not run)

qsz13/LANDD documentation built on May 26, 2019, 12:34 p.m.