lascouting: Find the liquid association scouting genes.
In qsz13/LANDD: Liquid Association for Network Dynamics Detection
Description
Usage
Arguments
Value
Examples
Description
lascouting() is used to find the liquid association scouting gene
Usage
1
lascouting(network.graph, express.matrix, k = 2, n.cores = 4)
Arguments
network.graph
An igraph object representing the gene network.
express.matrix
A matrix representing the expression matrix for the genes in gene
network. Row names are the gene ids in gene network.
k
Integer giving the order of the ego-network.
n.cores
Number of cores used for parallel computing.
Value
A logical matrix representing the LA-scouting genes for each gene. Rows represent
the ego gene id and columns represents the LA-scouting genes.
Examples
1
## Not run: laresult <- lascouting(g,m,k=2,n.cores=4)
qsz13/LANDD documentation built on May 26, 2019, 12:34 p.m.
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Description Usage Arguments Value Examples
Description
lascouting() is used to find the liquid association scouting gene
Usage
1 | lascouting(network.graph, express.matrix, k = 2, n.cores = 4)
|
Arguments
network.graph |
An igraph object representing the gene network. |
express.matrix |
A matrix representing the expression matrix for the genes in gene network. Row names are the gene ids in gene network. |
k |
Integer giving the order of the ego-network. |
n.cores |
Number of cores used for parallel computing. |
Value
A logical matrix representing the LA-scouting genes for each gene. Rows represent the ego gene id and columns represents the LA-scouting genes.
Examples
1 | ## Not run: laresult <- lascouting(g,m,k=2,n.cores=4)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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