find_motifs: Scan for motifs in candidate regions.
In quadbiolab/Pando: Inferring regulomes from multi-modal single-cell genomics data
find_motifs R Documentation
Scan for motifs in candidate regions.
Description
Scan for motifs in candidate regions.
Usage
find_motifs(object, ...)
## S3 method for class 'GRNData'
find_motifs(object, pfm, genome, motif_tfs = NULL, verbose = TRUE)
Arguments
pfm
A PFMatrixList object with position weight matrices.
genome
A BSgenome object with the genome of interest.
motif_tfs
A data frame matching motifs with TFs. The first column is assumed
to be the name of the motif, the second the name of the TF.
verbose
Display messages.
Value
A GRNData object with updated motif info.
quadbiolab/Pando documentation built on April 22, 2024, 8:14 a.m.
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| find_motifs | R Documentation |
Scan for motifs in candidate regions.
Description
Scan for motifs in candidate regions.
Usage
find_motifs(object, ...)
## S3 method for class 'GRNData'
find_motifs(object, pfm, genome, motif_tfs = NULL, verbose = TRUE)
Arguments
pfm |
A |
genome |
A |
motif_tfs |
A data frame matching motifs with TFs. The first column is assumed to be the name of the motif, the second the name of the TF. |
verbose |
Display messages. |
Value
A GRNData object with updated motif info.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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