get_tf_network: Get sub-network centered around one TF.

In quadbiolab/Pando: Inferring regulomes from multi-modal single-cell genomics data

Get sub-network centered around one TF.

Description

Get sub-network centered around one TF.

Usage

get_tf_network(object, ...)

## S3 method for class 'GRNData'
get_tf_network(
  object,
  tf,
  network = DefaultNetwork(object),
  graph = "module_graph",
  features = NULL,
  order = 3,
  keep_all_edges = FALSE,
  verbose = TRUE,
  parallel = FALSE
)

Arguments

object	An object.
tf	The transcription factor to center around.
network	Name of the network to use.
graph	Name of the graph.
features	Features to use. If NULL uses all features in the graph.
order	Integer indicating the maximal order of the graph.
keep_all_edges	Logical, whether to maintain all edges to each leaf or prune to the strongest overall connection.
verbose	Logical. Whether to print messages.
parallel	Logical. Whether to parallelize the computation with foreach.

Value

A GRNData object.

quadbiolab/Pando documentation built on April 22, 2024, 8:14 a.m.